IL_9WW4_116

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9WW4|1|AA|A|3901, 9WW4|1|AA|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_116 not in the Motif Atlas

Homologous match to IL_8GLP_129

Geometric discrepancy: 0.031

The information below is about IL_8GLP_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

9WW4|1|AA|G|3900
9WW4|1|AA|A|3901
9WW4|1|AA|A|3902
*
9WW4|1|AA|U|4558
9WW4|1|AA|A|4559
9WW4|1|AA|C|4560
9WW4|1|AA|C|4561

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AR

60S ribosomal protein L17