IL_9WW4_117

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

9WW4|1|AA|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_117 not in the Motif Atlas

Homologous match to IL_8GLP_130

Geometric discrepancy: 0.0412

The information below is about IL_8GLP_130

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9WW4|1|AA|G|3913
9WW4|1|AA|U|3914
9WW4|1|AA|U|3915
*
9WW4|1|AA|A|4388
9WW4|1|AA|C|4389

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain Ac

Large ribosomal subunit protein uL15