IL_9WW4_125

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

U(PSU)GA*(PSU)ACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_125 not in the Motif Atlas

Homologous match to IL_9AXU_094

Geometric discrepancy: 0.1183

The information below is about IL_9AXU_094

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9WW4|1|AA|U|4295
9WW4|1|AA|PSU|4296
9WW4|1|AA|G|4297
9WW4|1|AA|A|4298
*
9WW4|1|AA|PSU|4312
9WW4|1|AA|A|4313
9WW4|1|AA|C|4314
9WW4|1|AA|A|4315

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AG

Large ribosomal subunit protein uL18

Chain AS

60S ribosomal protein L18

Chain AV

60S ribosomal protein L21

Chain Ad

60S ribosomal protein L29

Chain Aq

60S ribosomal protein L36a