IL_9WW4_129

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(PSU)UG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_129 not in the Motif Atlas

Homologous match to IL_9SUM_097

Geometric discrepancy: 0.0834

The information below is about IL_9SUM_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46637.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

25

Unit IDs

9WW4|1|AA|PSU|4403
9WW4|1|AA|U|4404
9WW4|1|AA|G|4405
*
9WW4|1|AA|U|4439
9WW4|1|AA|G|4440

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AL

Ribosomal protein uL16-like