IL_9WW4_133

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

9WW4|1|AA|G|4522, 9WW4|1|AA|A2M|4523

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_133 not in the Motif Atlas

Homologous match to IL_9SUM_101

Geometric discrepancy: 0.0466

The information below is about IL_9SUM_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9WW4|1|AA|OMC|4456
9WW4|1|AA|PSU|4457
9WW4|1|AA|C|4458
*
9WW4|1|AA|G|4520
9WW4|1|AA|PSU|4521
9WW4|1|AA|G|4522
9WW4|1|AA|A2M|4523
9WW4|1|AA|G|4524

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AX

60S ribosomal protein L23