IL_9WW4_148

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9WW4|1|AA|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_148 not in the Motif Atlas

Homologous match to IL_8GLP_164

Geometric discrepancy: 0.0388

The information below is about IL_8GLP_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9WW4|1|AA|G|4680
9WW4|1|AA|A|4681
9WW4|1|AA|U|4682
9WW4|1|AA|U|4683
9WW4|1|AA|A|4684
9WW4|1|AA|U|4685
*
9WW4|1|AA|A|4705
9WW4|1|AA|G|4706
9WW4|1|AA|A|4707
9WW4|1|AA|A|4708
9WW4|1|AA|U|4709
9WW4|1|AA|C|4710

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AK

60S ribosomal protein L9

Chain AQ

60S ribosomal protein L13a

Chain Ao

Ubiquitin-60S ribosomal protein L40