IL_9WW4_171

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

9WW4|1|AC|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_171 not in the Motif Atlas

Homologous match to IL_8GLP_187

Geometric discrepancy: 0.0841

The information below is about IL_8GLP_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9WW4|1|AC|U|64
9WW4|1|AC|A|65
9WW4|1|AC|A|66
*
9WW4|1|AC|U|92
9WW4|1|AC|C|93
9WW4|1|AC|G|94
9WW4|1|AC|A|95

Current chains

Chain AC

5.8S rRNA (156-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Aa

60S ribosomal protein L26

Chain Aj

60S ribosomal protein L35

Chain Al

60S ribosomal protein L37