IL_9WW4_192

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_192 not in the Motif Atlas

Homologous match to IL_9PN5_162

Geometric discrepancy: 0.0981

The information below is about IL_9PN5_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9WW4|1|BA|G|437
9WW4|1|BA|G|438
9WW4|1|BA|A|439
*
9WW4|1|BA|U|454
9WW4|1|BA|A|455
9WW4|1|BA|C|456

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BH

40S ribosomal protein S8

Chain BW

40S ribosomal protein S6