IL_9WW4_220

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_220 not in the Motif Atlas

Homologous match to IL_9PN5_190

Geometric discrepancy: 0.0625

The information below is about IL_9PN5_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

9WW4|1|BA|C|1047
9WW4|1|BA|G|1048
9WW4|1|BA|A|1049
9WW4|1|BA|A|1050
9WW4|1|BA|G|1051
*
9WW4|1|BA|C|1067
9WW4|1|BA|G|1068
9WW4|1|BA|U|1069
9WW4|1|BA|A|1070
9WW4|1|BA|G|1071

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AD

60S ribosomal protein L8

Chain BR

40S ribosomal protein S26

Chain Ba

Small ribosomal subunit protein uS11