IL_9WW4_236

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

9WW4|1|BA|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_236 not in the Motif Atlas

Geometric match to IL_8GLP_259

Geometric discrepancy: 0.112

The information below is about IL_8GLP_259

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82453.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|U|1329
9WW4|1|BA|G|1330
9WW4|1|BA|C|1331
9WW4|1|BA|A|1332
9WW4|1|BA|U|1333
*
9WW4|1|BA|A|1498
9WW4|1|BA|U|1499
9WW4|1|BA|G|1500

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BE

40S ribosomal protein S3

Chain BI

40S ribosomal protein S10

Chain BO

40S ribosomal protein S20

Chain BT

40S ribosomal protein S29