IL_9WW4_239

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(4AC)G*CA(OMG)

Length

5 nucleotides

Bulged bases

9WW4|1|BA|A|1489

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_239 not in the Motif Atlas

Homologous match to IL_9H3G_222

Geometric discrepancy: 0.0916

The information below is about IL_9H3G_222

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9WW4|1|BA|4AC|1337
9WW4|1|BA|G|1338
*
9WW4|1|BA|C|1488
9WW4|1|BA|A|1489
9WW4|1|BA|OMG|1490

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BE

40S ribosomal protein S3

Chain BL

40S ribosomal protein S16

Chain BO

40S ribosomal protein S20

Chain BT

40S ribosomal protein S29

Chain BV

40S ribosomal protein S2