IL_9WW4_261

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW4_261 not in the Motif Atlas

Homologous match to IL_9H3G_243

Geometric discrepancy: 0.0738

The information below is about IL_9H3G_243

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9WW4|1|BA|C|1742
9WW4|1|BA|G|1743
9WW4|1|BA|G|1744
9WW4|1|BA|A|1745
9WW4|1|BA|U|1746
*
9WW4|1|BA|A|1788
9WW4|1|BA|G|1789
9WW4|1|BA|A|1790
9WW4|1|BA|A|1791
9WW4|1|BA|G|1792

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AY

60S ribosomal protein L24

Chain BH

40S ribosomal protein S8

Chain BW

40S ribosomal protein S6