3D structure

PDB id
9WW6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human 80S ribosome delta eL41 non-rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
UGGAAUG*CGAGAGA
Length
14 nucleotides
Bulged bases
9WW6|1|AA|U|2661, 9WW6|1|AA|A|2674
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9WW6|1|AA|U|2656
9WW6|1|AA|G|2657
9WW6|1|AA|G|2658
9WW6|1|AA|A|2659
9WW6|1|AA|A|2660
9WW6|1|AA|U|2661
9WW6|1|AA|G|2662
*
9WW6|1|AA|C|2672
9WW6|1|AA|G|2673
9WW6|1|AA|A|2674
9WW6|1|AA|G|2675
9WW6|1|AA|A|2676
9WW6|1|AA|G|2677
9WW6|1|AA|A|2678

Current chains

Chain AA
28S rRNA (3773-MER)

Nearby chains

Chain AT
60S ribosomal protein L19
Chain Ab
60S ribosomal protein L27
Chain Ae
60S ribosomal protein L30
Chain Ai
60S ribosomal protein L34
Chain Ar
60S ribosomal protein L37a
Chain BZ
40S ribosomal protein S13

Coloring options:

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