IL_9WW6_181

3D structure

PDB id

9WW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome delta eL41 non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GCUCCUCUCCCACUU*AUGCCGAC

Length

23 nucleotides

Bulged bases

9WW6|1|BA|C|131, 9WW6|1|BA|U|132, 9WW6|1|BA|C|133, 9WW6|1|BA|C|134, 9WW6|1|BA|U|135, 9WW6|1|BA|C|136, 9WW6|1|BA|U|137, 9WW6|1|BA|C|138, 9WW6|1|BA|C|139, 9WW6|1|BA|C|142, 9WW6|1|BA|U|143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW6|1|BA|G|130
9WW6|1|BA|C|131
9WW6|1|BA|U|132
9WW6|1|BA|C|133
9WW6|1|BA|C|134
9WW6|1|BA|U|135
9WW6|1|BA|C|136
9WW6|1|BA|U|137
9WW6|1|BA|C|138
9WW6|1|BA|C|139
9WW6|1|BA|C|140
9WW6|1|BA|A|141
9WW6|1|BA|C|142
9WW6|1|BA|U|143
9WW6|1|BA|U|144
*
9WW6|1|BA|A|175
9WW6|1|BA|U|176
9WW6|1|BA|G|177
9WW6|1|BA|C|178
9WW6|1|BA|C|179
9WW6|1|BA|G|180
9WW6|1|BA|A|181
9WW6|1|BA|C|182

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BW

40S ribosomal protein S6