3D structure

PDB id
9WW6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human 80S ribosome delta eL41 non-rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
CA(PSU)U*ACCUCGGG
Length
12 nucleotides
Bulged bases
9WW6|1|BA|U|305, 9WW6|1|BA|G|307
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9WW6|1|BA|C|216
9WW6|1|BA|A|217
9WW6|1|BA|PSU|218
9WW6|1|BA|U|219
*
9WW6|1|BA|A|302
9WW6|1|BA|C|303
9WW6|1|BA|C|304
9WW6|1|BA|U|305
9WW6|1|BA|C|306
9WW6|1|BA|G|307
9WW6|1|BA|G|308
9WW6|1|BA|G|309

Current chains

Chain BA
18S rRNA (1740-MER)

Nearby chains

Chain BB
40S ribosomal protein S4, X isoform
Chain BH
40S ribosomal protein S8

Coloring options:

Copyright 2026 BGSU RNA group. Database contents are licensed under Creative Commons Attribution 4.0 International (CC BY 4.0). Page generated in 0.0833 s