IL_9WW6_203

3D structure

PDB id

9WW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome delta eL41 non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UUGAAAAAA(PSU)(PSU)AGAGUG(PSU)UCAAAGCAG*CUGGAUACCGCAGCUA

Length

43 nucleotides

Bulged bases

9WW6|1|BA|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW6|1|BA|U|805
9WW6|1|BA|U|806
9WW6|1|BA|G|807
9WW6|1|BA|A|808
9WW6|1|BA|A|809
9WW6|1|BA|A|810
9WW6|1|BA|A|811
9WW6|1|BA|A|812
9WW6|1|BA|A|813
9WW6|1|BA|PSU|814
9WW6|1|BA|PSU|815
9WW6|1|BA|A|816
9WW6|1|BA|G|817
9WW6|1|BA|A|818
9WW6|1|BA|G|819
9WW6|1|BA|U|820
9WW6|1|BA|G|821
9WW6|1|BA|PSU|822
9WW6|1|BA|U|823
9WW6|1|BA|C|824
9WW6|1|BA|A|825
9WW6|1|BA|A|826
9WW6|1|BA|A|827
9WW6|1|BA|G|828
9WW6|1|BA|C|829
9WW6|1|BA|A|830
9WW6|1|BA|G|831
*
9WW6|1|BA|C|843
9WW6|1|BA|U|844
9WW6|1|BA|G|845
9WW6|1|BA|G|846
9WW6|1|BA|A|847
9WW6|1|BA|U|848
9WW6|1|BA|A|849
9WW6|1|BA|C|850
9WW6|1|BA|C|851
9WW6|1|BA|G|852
9WW6|1|BA|C|853
9WW6|1|BA|A|854
9WW6|1|BA|G|855
9WW6|1|BA|C|856
9WW6|1|BA|U|857
9WW6|1|BA|A|858

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BJ

40S ribosomal protein S11

Chain BX

40S ribosomal protein S9

Chain Bb

40S ribosomal protein S15a

Chain Bc

40S ribosomal protein S24