3D structure

PDB id
9WW6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human 80S ribosome delta eL41 non-rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
GUGCCUACC*GUAACC
Length
15 nucleotides
Bulged bases
9WW6|1|BA|A|1580, 9WW6|1|BA|C|1581
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9WW6|1|BA|G|1550
9WW6|1|BA|U|1551
9WW6|1|BA|G|1552
9WW6|1|BA|C|1553
9WW6|1|BA|C|1554
9WW6|1|BA|U|1555
9WW6|1|BA|A|1556
9WW6|1|BA|C|1557
9WW6|1|BA|C|1558
*
9WW6|1|BA|G|1577
9WW6|1|BA|U|1578
9WW6|1|BA|A|1579
9WW6|1|BA|A|1580
9WW6|1|BA|C|1581
9WW6|1|BA|C|1582

Current chains

Chain BA
18S rRNA (1740-MER)

Nearby chains

Chain BE
40S ribosomal protein S3
Chain BI
40S ribosomal protein S10
Chain BN
Small ribosomal subunit protein eS19
Chain BO
40S ribosomal protein S20
Chain BT
40S ribosomal protein S29

Coloring options:

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