IL_9XFK_009

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_009 not in the Motif Atlas

Homologous match to IL_8B0X_073

Geometric discrepancy: 0.5231

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9XFK|1|I|C|274
9XFK|1|I|C|275
9XFK|1|I|U|276
9XFK|1|I|G|277
9XFK|1|I|A|278
9XFK|1|I|A|279
9XFK|1|I|U|280
9XFK|1|I|C|281
*
9XFK|1|I|G|359
9XFK|1|I|U|360
9XFK|1|I|G|361
9XFK|1|I|A|362
9XFK|1|I|G|363

Current chains

Chain I

23S rRNA

Nearby chains