IL_9XFK_012

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_012 not in the Motif Atlas

Geometric match to IL_8B0X_076

Geometric discrepancy: 0.0735

The information below is about IL_8B0X_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9XFK|1|I|G|536
9XFK|1|I|G|537
9XFK|1|I|A|538
9XFK|1|I|G|539
*
9XFK|1|I|U|554
9XFK|1|I|G|555
9XFK|1|I|A|556
9XFK|1|I|C|557

Current chains

Chain I

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L13

Chain Y

50S ribosomal protein L20