IL_9XFK_029

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_029 not in the Motif Atlas

Homologous match to IL_7A0S_029

Geometric discrepancy: 0.2415

The information below is about IL_7A0S_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.2

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

10

Unit IDs

9XFK|1|I|G|864
9XFK|1|I|C|865
9XFK|1|I|A|866
9XFK|1|I|C|867
9XFK|1|I|U|868
*
9XFK|1|I|A|909
9XFK|1|I|A|910
9XFK|1|I|A|911
9XFK|1|I|C|912

Current chains

Chain I

23S rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain U

Large ribosomal subunit protein uL16