IL_9XFK_030

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UUUC*GAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_030 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.2727

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9XFK|1|I|U|870
9XFK|1|I|U|871
9XFK|1|I|U|872
9XFK|1|I|C|873
*
9XFK|1|I|G|904
9XFK|1|I|A|905
9XFK|1|I|U|906
9XFK|1|I|G|907

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL16