IL_9XFK_031

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_031 not in the Motif Atlas

Geometric match to IL_8B0X_094

Geometric discrepancy: 0.3255

The information below is about IL_8B0X_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9XFK|1|I|G|875
9XFK|1|I|C|876
9XFK|1|I|A|877
9XFK|1|I|A|878
9XFK|1|I|G|879
*
9XFK|1|I|C|898
9XFK|1|I|A|899
9XFK|1|I|A|900
9XFK|1|I|C|901
9XFK|1|I|C|902

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL16