IL_9XFK_032

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

9XFK|1|I|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_032 not in the Motif Atlas

Geometric match to IL_4V9F_032

Geometric discrepancy: 0.3268

The information below is about IL_4V9F_032

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9XFK|1|I|G|880
9XFK|1|I|G|881
*
9XFK|1|I|U|895
9XFK|1|I|A|896
9XFK|1|I|C|897

Current chains

Chain I

23S rRNA

Nearby chains