IL_9XFK_047

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_047 not in the Motif Atlas

Homologous match to IL_7A0S_048

Geometric discrepancy: 0.1329

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9XFK|1|I|C|1351
9XFK|1|I|U|1352
9XFK|1|I|A|1353
9XFK|1|I|A|1354
9XFK|1|I|G|1355
*
9XFK|1|I|C|1376
9XFK|1|I|G|1377
9XFK|1|I|A|1378
9XFK|1|I|U|1379
9XFK|1|I|G|1380

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL2

Chain k

50S ribosomal protein L34