IL_9XFK_057

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

9XFK|1|I|A|1490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_057 not in the Motif Atlas

Geometric match to IL_9G4Q_001

Geometric discrepancy: 0.3266

The information below is about IL_9G4Q_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9XFK|1|I|C|1489
9XFK|1|I|A|1490
9XFK|1|I|G|1491
*
9XFK|1|I|C|1499
9XFK|1|I|G|1500

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL2