IL_9XFK_075
3D structure
- PDB id
- 9XFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 9XFK|1|I|A|1938, 9XFK|1|I|U|1944, 9XFK|1|I|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9XFK_075 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.2275
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
9XFK|1|I|C|1934
9XFK|1|I|G|1935
9XFK|1|I|A|1936
9XFK|1|I|A|1937
9XFK|1|I|A|1938
9XFK|1|I|5MU|1939
9XFK|1|I|U|1940
9XFK|1|I|C|1941
9XFK|1|I|C|1942
9XFK|1|I|U|1943
9XFK|1|I|U|1944
9XFK|1|I|G|1945
*
9XFK|1|I|C|1961
9XFK|1|I|5MC|1962
9XFK|1|I|U|1963
9XFK|1|I|G|1964
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL2
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