IL_9XFK_082

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGU

Length

35 nucleotides

Bulged bases

9XFK|1|I|U|2109, 9XFK|1|I|A|2114, 9XFK|1|I|G|2116, 9XFK|1|I|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|I|G|2102
9XFK|1|I|C|2103
9XFK|1|I|C|2104
9XFK|1|I|U|2105
9XFK|1|I|U|2106
9XFK|1|I|G|2107
9XFK|1|I|A|2108
9XFK|1|I|U|2109
9XFK|1|I|G|2110
9XFK|1|I|U|2111
9XFK|1|I|G|2112
9XFK|1|I|U|2113
9XFK|1|I|A|2114
9XFK|1|I|G|2115
9XFK|1|I|G|2116
9XFK|1|I|A|2117
9XFK|1|I|U|2118
9XFK|1|I|A|2119
9XFK|1|I|G|2120
9XFK|1|I|G|2121
9XFK|1|I|U|2122
9XFK|1|I|G|2123
*
9XFK|1|I|C|2175
9XFK|1|I|A|2176
9XFK|1|I|C|2177
9XFK|1|I|C|2178
9XFK|1|I|C|2179
9XFK|1|I|U|2180
9XFK|1|I|U|2181
9XFK|1|I|U|2182
9XFK|1|I|A|2183
9XFK|1|I|A|2184
9XFK|1|I|U|2185
9XFK|1|I|G|2186
9XFK|1|I|U|2187

Current chains

Chain I

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L9