IL_9XFK_083

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGGAGGCUUUGAAGUGUGGAC*GUCUGCAUGGAGCCGACCUUGAAAUACC

Length

49 nucleotides

Bulged bases

9XFK|1|I|U|2131, 9XFK|1|I|U|2132, 9XFK|1|I|U|2139, 9XFK|1|I|A|2142, 9XFK|1|I|A|2158, 9XFK|1|I|C|2164, 9XFK|1|I|G|2168, 9XFK|1|I|A|2169, 9XFK|1|I|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|I|G|2123
9XFK|1|I|G|2124
9XFK|1|I|G|2125
9XFK|1|I|A|2126
9XFK|1|I|G|2127
9XFK|1|I|G|2128
9XFK|1|I|C|2129
9XFK|1|I|U|2130
9XFK|1|I|U|2131
9XFK|1|I|U|2132
9XFK|1|I|G|2133
9XFK|1|I|A|2134
9XFK|1|I|A|2135
9XFK|1|I|G|2136
9XFK|1|I|U|2137
9XFK|1|I|G|2138
9XFK|1|I|U|2139
9XFK|1|I|G|2140
9XFK|1|I|G|2141
9XFK|1|I|A|2142
9XFK|1|I|C|2143
*
9XFK|1|I|G|2148
9XFK|1|I|U|2149
9XFK|1|I|C|2150
9XFK|1|I|U|2151
9XFK|1|I|G|2152
9XFK|1|I|C|2153
9XFK|1|I|A|2154
9XFK|1|I|U|2155
9XFK|1|I|G|2156
9XFK|1|I|G|2157
9XFK|1|I|A|2158
9XFK|1|I|G|2159
9XFK|1|I|C|2160
9XFK|1|I|C|2161
9XFK|1|I|G|2162
9XFK|1|I|A|2163
9XFK|1|I|C|2164
9XFK|1|I|C|2165
9XFK|1|I|U|2166
9XFK|1|I|U|2167
9XFK|1|I|G|2168
9XFK|1|I|A|2169
9XFK|1|I|A|2170
9XFK|1|I|A|2171
9XFK|1|I|U|2172
9XFK|1|I|A|2173
9XFK|1|I|C|2174
9XFK|1|I|C|2175

Current chains

Chain I

23S rRNA

Nearby chains