IL_9XFK_086

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

9XFK|1|I|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_086 not in the Motif Atlas

Homologous match to IL_7A0S_082

Geometric discrepancy: 0.5249

The information below is about IL_7A0S_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9XFK|1|I|U|2401
9XFK|1|I|U|2402
9XFK|1|I|C|2403
*
9XFK|1|I|G|2414
9XFK|1|I|G|2415

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain j

50S ribosomal protein L33

Chain l

50S ribosomal protein L35