IL_9XFK_107

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFK_107 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.3694

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

9XFK|1|I|U|2847
9XFK|1|I|G|2848
9XFK|1|I|U|2849
9XFK|1|I|A|2850
9XFK|1|I|A|2851
9XFK|1|I|G|2852
*
9XFK|1|I|U|2865
9XFK|1|I|U|2866
9XFK|1|I|G|2867
9XFK|1|I|A|2868
9XFK|1|I|G|2869

Current chains

Chain I

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein bL17

Chain X

50S ribosomal protein L19