IL_9XFL_009

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFL_009 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.2989

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9XFL|1|I|C|274
9XFL|1|I|C|275
9XFL|1|I|U|276
9XFL|1|I|G|277
9XFL|1|I|A|278
9XFL|1|I|A|279
9XFL|1|I|U|280
9XFL|1|I|C|281
*
9XFL|1|I|G|359
9XFL|1|I|U|360
9XFL|1|I|G|361
9XFL|1|I|A|362
9XFL|1|I|G|363

Current chains

Chain I

23S rRNA

Nearby chains