IL_9XFL_031

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFL_031 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2104

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9XFL|1|I|G|875
9XFL|1|I|C|876
9XFL|1|I|A|877
9XFL|1|I|A|878
9XFL|1|I|G|879
*
9XFL|1|I|C|898
9XFL|1|I|A|899
9XFL|1|I|A|900
9XFL|1|I|C|901
9XFL|1|I|C|902

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL16