IL_9XFL_087

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GGGAGGCUUUGAAG*UGGAGCCGACCUUGAAAUACC

Length

35 nucleotides

Bulged bases

9XFL|1|I|U|2132, 9XFL|1|I|A|2158, 9XFL|1|I|A|2163, 9XFL|1|I|C|2164, 9XFL|1|I|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFL|1|I|G|2123
9XFL|1|I|G|2124
9XFL|1|I|G|2125
9XFL|1|I|A|2126
9XFL|1|I|G|2127
9XFL|1|I|G|2128
9XFL|1|I|C|2129
9XFL|1|I|U|2130
9XFL|1|I|U|2131
9XFL|1|I|U|2132
9XFL|1|I|G|2133
9XFL|1|I|A|2134
9XFL|1|I|A|2135
9XFL|1|I|G|2136
*
9XFL|1|I|U|2155
9XFL|1|I|G|2156
9XFL|1|I|G|2157
9XFL|1|I|A|2158
9XFL|1|I|G|2159
9XFL|1|I|C|2160
9XFL|1|I|C|2161
9XFL|1|I|G|2162
9XFL|1|I|A|2163
9XFL|1|I|C|2164
9XFL|1|I|C|2165
9XFL|1|I|U|2166
9XFL|1|I|U|2167
9XFL|1|I|G|2168
9XFL|1|I|A|2169
9XFL|1|I|A|2170
9XFL|1|I|A|2171
9XFL|1|I|U|2172
9XFL|1|I|A|2173
9XFL|1|I|C|2174
9XFL|1|I|C|2175

Current chains

Chain I

23S rRNA

Nearby chains