IL_9XFL_090

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

9XFL|1|I|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XFL_090 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.2103

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9XFL|1|I|U|2401
9XFL|1|I|U|2402
9XFL|1|I|C|2403
*
9XFL|1|I|G|2414
9XFL|1|I|G|2415

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain j

50S ribosomal protein L33

Chain l

50S ribosomal protein L35