IL_9XTD_010

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTD_010 not in the Motif Atlas

Homologous match to IL_6CZR_120

Geometric discrepancy: 0.1842

The information below is about IL_6CZR_120

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

9XTD|1|A|C|132
9XTD|1|A|U|133
9XTD|1|A|G|134
9XTD|1|A|C|135
9XTD|1|A|C|136
*
9XTD|1|A|G|227
9XTD|1|A|A|228
9XTD|1|A|U|229
9XTD|1|A|G|230

Current chains

Chain A

RNA (1128-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

Small ribosomal subunit protein bS20