IL_9XTD_034

3D structure

PDB id

9XTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class B, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTD_034 not in the Motif Atlas

Homologous match to IL_6CZR_409

Geometric discrepancy: 0.1737

The information below is about IL_6CZR_409

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9XTD|1|A|A|673
9XTD|1|A|G|674
9XTD|1|A|A|675
9XTD|1|A|A|676
9XTD|1|A|U|677
*
9XTD|1|A|G|713
9XTD|1|A|G|714
9XTD|1|A|A|715
9XTD|1|A|A|716
9XTD|1|A|U|717

Current chains

Chain A

RNA (1128-MER)

Nearby chains

Chain F

Small ribosomal subunit protein bS6, non-modified isoform

Chain K

Small ribosomal subunit protein uS11

Chain R

Small ribosomal subunit protein bS18