IL_9XTE_009

3D structure

PDB id

9XTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class A, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

9XTE|1|A|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTE_009 not in the Motif Atlas

Geometric match to IL_8B0X_009

Geometric discrepancy: 0.0425

The information below is about IL_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9XTE|1|A|G|128
9XTE|1|A|A|129
9XTE|1|A|A|130
9XTE|1|A|A|131
*
9XTE|1|A|U|231
9XTE|1|A|G|232
9XTE|1|A|C|233

Current chains

Chain A

RNA (1026-MER)

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20