IL_9XWO_102
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9XWO|1|a|A|1127, 9XWO|1|a|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9XWO_102 not in the Motif Atlas
- Homologous match to IL_7A0S_037
- Geometric discrepancy: 0.309
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9XWO|1|a|G|1024
9XWO|1|a|G|1025
9XWO|1|a|G|1026
9XWO|1|a|A|1027
9XWO|1|a|A|1028
9XWO|1|a|A|1029
9XWO|1|a|C|1030
*
9XWO|1|a|G|1124
9XWO|1|a|G|1125
9XWO|1|a|A|1126
9XWO|1|a|A|1127
9XWO|1|a|G|1128
9XWO|1|a|A|1129
9XWO|1|a|U|1130
9XWO|1|a|G|1131
9XWO|1|a|U|1132
9XWO|1|a|A|1133
9XWO|1|a|A|1134
9XWO|1|a|C|1135
9XWO|1|a|G|1136
9XWO|1|a|G|1137
9XWO|1|a|G|1138
9XWO|1|a|G|1139
9XWO|1|a|C|1140
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
- Chain l
- 50S ribosomal protein L16
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