IL_9XWO_104
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9XWO_104 not in the Motif Atlas
- Geometric match to IL_8B0X_103
- Geometric discrepancy: 0.1207
- The information below is about IL_8B0X_103
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
9XWO|1|a|G|1038
9XWO|1|a|A|1039
9XWO|1|a|A|1040
9XWO|1|a|G|1041
*
9XWO|1|a|C|1114
9XWO|1|a|G|1115
9XWO|1|a|G|1116
9XWO|1|a|C|1117
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain g
- Large ribosomal subunit protein uL6
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L25
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