IL_9XWO_110

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9XWO|1|a|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XWO_110 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2415

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9XWO|1|a|C|1319
9XWO|1|a|C|1320
9XWO|1|a|A|1321
9XWO|1|a|A|1322
9XWO|1|a|C|1323
*
9XWO|1|a|G|1331
9XWO|1|a|G|1332
9XWO|1|a|G|1333

Current chains

Chain a

23S rRNA

Nearby chains

Chain 6

Secretion monitor

Chain r

50S ribosomal protein L22

Chain s

Large ribosomal subunit protein uL23