IL_9XWO_114

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9XWO|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XWO_114 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.4901

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.3

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9XWO|1|a|C|1417
9XWO|1|a|G|1418
9XWO|1|a|A|1419
9XWO|1|a|A|1420
9XWO|1|a|G|1421
*
9XWO|1|a|C|1577
9XWO|1|a|U|1578
9XWO|1|a|A|1579
9XWO|1|a|A|1580
9XWO|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains