IL_9XWO_122

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XWO_122 not in the Motif Atlas

Geometric match to IL_8B0X_122

Geometric discrepancy: 0.0881

The information below is about IL_8B0X_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45790.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9XWO|1|a|C|1526
9XWO|1|a|G|1527
9XWO|1|a|A|1528
9XWO|1|a|G|1529
*
9XWO|1|a|U|1542
9XWO|1|a|G|1543
9XWO|1|a|A|1544
9XWO|1|a|A|1545
9XWO|1|a|G|1546

Current chains

Chain a

23S rRNA

Nearby chains