IL_9XWO_149

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUGUAGGAUAGGUGGGAG*CGACCUUGAAAUACCACCC

Length

37 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XWO|1|a|G|2110
9XWO|1|a|U|2111
9XWO|1|a|G|2112
9XWO|1|a|U|2113
9XWO|1|a|A|2114
9XWO|1|a|G|2115
9XWO|1|a|G|2116
9XWO|1|a|A|2117
9XWO|1|a|U|2118
9XWO|1|a|A|2119
9XWO|1|a|G|2120
9XWO|1|a|G|2121
9XWO|1|a|U|2122
9XWO|1|a|G|2123
9XWO|1|a|G|2124
9XWO|1|a|G|2125
9XWO|1|a|A|2126
9XWO|1|a|G|2127
*
9XWO|1|a|C|2161
9XWO|1|a|G|2162
9XWO|1|a|A|2163
9XWO|1|a|C|2164
9XWO|1|a|C|2165
9XWO|1|a|U|2166
9XWO|1|a|U|2167
9XWO|1|a|G|2168
9XWO|1|a|A|2169
9XWO|1|a|A|2170
9XWO|1|a|A|2171
9XWO|1|a|U|2172
9XWO|1|a|A|2173
9XWO|1|a|C|2174
9XWO|1|a|C|2175
9XWO|1|a|A|2176
9XWO|1|a|C|2177
9XWO|1|a|C|2178
9XWO|1|a|C|2179

Current chains

Chain a

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain 7

Large ribosomal subunit protein uL1