IL_9XWO_150

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAUAGGUGGGAG*CGACC

Length

17 nucleotides

Bulged bases

9XWO|1|a|U|2118, 9XWO|1|a|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XWO|1|a|G|2116
9XWO|1|a|A|2117
9XWO|1|a|U|2118
9XWO|1|a|A|2119
9XWO|1|a|G|2120
9XWO|1|a|G|2121
9XWO|1|a|U|2122
9XWO|1|a|G|2123
9XWO|1|a|G|2124
9XWO|1|a|G|2125
9XWO|1|a|A|2126
9XWO|1|a|G|2127
*
9XWO|1|a|C|2161
9XWO|1|a|G|2162
9XWO|1|a|A|2163
9XWO|1|a|C|2164
9XWO|1|a|C|2165

Current chains

Chain a

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain 7

Large ribosomal subunit protein uL1