IL_9XWO_163
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CA*UACG
- Length
- 6 nucleotides
- Bulged bases
- 9XWO|1|a|A|2572, 9XWO|1|a|C|2573
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9XWO_163 not in the Motif Atlas
- Homologous match to IL_7A0S_090
- Geometric discrepancy: 0.1533
- The information below is about IL_7A0S_090
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
9XWO|1|a|C|2512
9XWO|1|a|A|2513
*
9XWO|1|a|U|2571
9XWO|1|a|A|2572
9XWO|1|a|C|2573
9XWO|1|a|G|2574
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 6
- Secretion monitor
- Chain Y
- Transfer RNA; tRNA
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
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