IL_9Y49_006
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y49_006 not in the Motif Atlas
- Homologous match to IL_8GLP_006
- Geometric discrepancy: 0.1939
- The information below is about IL_8GLP_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9Y49|1|A5|C|81
9Y49|1|A5|U|82
9Y49|1|A5|C|83
9Y49|1|A5|A|84
9Y49|1|A5|G|85
9Y49|1|A5|U|86
9Y49|1|A5|A|87
9Y49|1|A5|A|88
*
9Y49|1|A5|U|96
9Y49|1|A5|G|97
9Y49|1|A5|A|98
9Y49|1|A5|A|99
9Y49|1|A5|C|100
9Y49|1|A5|A|101
9Y49|1|A5|G|102
Current chains
- Chain A5
- LSU-alpha rRNA (1722-MER)
Nearby chains
- Chain CL
- 60S ribosomal protein L13
- Chain CN
- 60S ribosomal protein L15
- Chain CQ
- 60S ribosomal protein L18
- Chain Ca
- 60S ribosomal protein L27a
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