IL_9Y49_014

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9Y49|1|A5|C|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_014 not in the Motif Atlas

Homologous match to IL_8GLP_015

Geometric discrepancy: 0.1622

The information below is about IL_8GLP_015

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9Y49|1|A5|C|195
9Y49|1|A5|C|196
*
9Y49|1|A5|G|244
9Y49|1|A5|C|245
9Y49|1|A5|G|246

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26