IL_9Y49_018

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAAAC*GUGGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_018 not in the Motif Atlas

Homologous match to IL_8GLP_021

Geometric discrepancy: 0.1391

The information below is about IL_8GLP_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22311.3

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9Y49|1|A5|G|415
9Y49|1|A5|U|416
9Y49|1|A5|G|417
9Y49|1|A5|A|418
9Y49|1|A5|A|419
9Y49|1|A5|A|420
9Y49|1|A5|C|421
*
9Y49|1|A8|G|13
9Y49|1|A8|U|14
9Y49|1|A8|G|15
9Y49|1|A8|G|16
9Y49|1|A8|A|17
9Y49|1|A8|U|18
9Y49|1|A8|C|19

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Chain A8

5.8S rRNA (157-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CC

60S ribosomal protein L4

Chain CP

60S ribosomal protein L17

Chain Ce

60S ribosomal protein L32