IL_9Y49_038

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGGAAGGCC*GCAGCAGCGCUCG

Length

24 nucleotides

Bulged bases

9Y49|1|A5|G|729, 9Y49|1|A5|G|933, 9Y49|1|A5|C|934, 9Y49|1|A5|G|935, 9Y49|1|A5|C|936, 9Y49|1|A5|U|937, 9Y49|1|A5|C|938

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|A5|C|727
9Y49|1|A5|U|728
9Y49|1|A5|G|729
9Y49|1|A5|G|730
9Y49|1|A5|G|731
9Y49|1|A5|A|732
9Y49|1|A5|A|733
9Y49|1|A5|G|734
9Y49|1|A5|G|735
9Y49|1|A5|C|736
9Y49|1|A5|C|737
*
9Y49|1|A5|G|927
9Y49|1|A5|C|928
9Y49|1|A5|A|929
9Y49|1|A5|G|930
9Y49|1|A5|C|931
9Y49|1|A5|A|932
9Y49|1|A5|G|933
9Y49|1|A5|C|934
9Y49|1|A5|G|935
9Y49|1|A5|C|936
9Y49|1|A5|U|937
9Y49|1|A5|C|938
9Y49|1|A5|G|939

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CF

60S ribosomal protein L7

Chain CM

60S ribosomal protein L14

Chain CS

60S ribosomal protein L18a