IL_9Y49_047

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y49_047 not in the Motif Atlas

Geometric match to IL_8GLP_054

Geometric discrepancy: 0.2173

The information below is about IL_8GLP_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9Y49|1|A5|C|1097
9Y49|1|A5|G|1098
*
9Y49|1|A5|C|1197
9Y49|1|A5|G|1198
9Y49|1|A5|G|1199

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain CS

60S ribosomal protein L18a

Chain CT

60S ribosomal protein L21